What antimicrobial therapy is recommended or studied for the treatment of Kluyveromyces marxianus (Candida kefyr)?

Comment by InpharmD Researcher

Kluyveromyces marxianus (also known as Candida kefyr) is an emerging opportunistic fungal pathogen with little data regarding human infections. Case reports describe successful treatment using azole antifungals (e.g., fluconazole, voriconazole, posaconazole) and/or amphotericin B. Although in vitro data suggest susceptibility to fluconazole, micagungin, amphotericin B, and flucytosine, clinical isolates have reported varying resistance to antifungals (including panreistance), resulting in mixed clinical outcomes.

Background

A 2014 retrospective, single-center analysis examined the epidemiology of Candida kefyr (also known as Kluyveromyces marxianus) colonization and infection among patients with hematologic malignancies at Johns Hopkins Hospital between January 2004 and December 2010. All patients with a culture positive for C. kefyr, those admitted to two dedicated hematology wards who underwent routine weekly surveillance cultures, and a sub-cohort of patients with acute myelogenous leukemia (AML) receiving intensive induction chemotherapy were included. A nested case-control study within the AML subcohort demonstrated that 9.6% (8/83) of HM patients with positive C. kefyr cultures developed invasive candidiasis (IC), all of whom had a prior history of colonization. A notable seasonal pattern emerged: colonization and bloodstream infections peaked in the summer months (July to September), independent of year or treatment setting, a trend corroborated by parallel data from a Montreal-based tertiary care center. Among AML patients, colonization was significantly associated with summertime hospital admission (odds ratio [OR], 3.1; p= 0.03), while antifungal exposure to azoles (OR, 0.06; p<0.001) and amphotericin B (OR, 0.35; p= 0.05) conferred protective effects. Breakthrough infections occurred in five episodes during antifungal therapy, with isolates demonstrating resistance to the ongoing agents (fluconazole, micagungin, amphotericin B, and flucytosine; one isolate was pan-resistant and resulted in patient death). Fingerprinting revealed high genetic diversity among isolates, excluding a clonal outbreak. C. kefyr isolates consistently appeared genetically distinct, suggesting multiple sources rather than nosocomial transmission. These data indicate an emerging pattern of C. kefyr as a clinically significant pathogen in immunocompromised populations, with implications for empiric antifungal strategies and infection control practices. [1]

A 2020 retrospective study analyzed 69 clinical isolates of Kluyveromyces marxianus (Candida kefyr) obtained between 2011 and 2018 from a variety of specimen types, including 18 from sputum. The study assessed antifungal susceptibility and interpreted results according to CLSI breakpoints for Candida albicans due to the absence of species-specific breakpoints for C. kefyr. Among 63 evaluable isolates, 5 (7.8%) exhibited reduced susceptibility to amphotericin B, 1 (1.6%) to fluconazole, 1 (1.6%) to voriconazole, and 1 (1.6%) to caspofungin, with the other isolates demonstrating low MICs to fluconazole, voriconazole, amphotericin B, and caspofungin. Notably, the study did not provide specific treatment recommendations; however, it emphasized that susceptibility testing was performed and noted emerging resistance among certain isolates. [2]

A 2014 short communication reported a retrospective analysis of bloodstream infections caused by uncommon opportunistic yeasts in a single tertiary care hospital in Qatar over a six-year period (2004–2010). Seventeen cases of fungemia were identified among 187 patients with confirmed Candida bloodstream infections, accounting for 201 episodes in total. The aged extremes of the population were disproportionately affected, with 10 of 17 cases occurring in patients under 15 years and 5 cases in those over 65. Yeast isolates included species not frequently reported in clinical practice, such as Kluyveromyces marxianus (1 case in 1970), Lodderomyces elongisporus, Lindnera fabianii, Meyerozyma guilliermondii, Yarrowia lipolytica, and Wickerhamomyces anomalus. Species identification was performed using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS), which demonstrated 100% concordance with molecular sequencing of the D1/D2 and ITS regions, indicating high diagnostic accuracy (κ = 1.0). Antifungal susceptibility testing utilized the Clinical and Laboratory Standards Institute (CLSI) M27-A3 broth microdilution method, with MIC interpretive breakpoints applied per M27-S4 guidelines where available. [3]

Results revealed low minimum inhibitory concentrations (MICs) for isavuconazole and voriconazole across all isolates, with values ranging from ≤0.016 to 0.25 µg/mL. Notably, Meyerozyma guilliermondii displayed MICs of 1–2 µg/mL for echinocandins, suggesting reduced susceptibility, while Pichia kudriavzevii exhibited resistance to fluconazole (MIC 32–64 µg/mL) and borderline resistance to caspofungin (MIC = 1 µg/mL). A 30-day all-cause mortality rate of 41% was observed, underscoring the clinical significance of these rare pathogens despite antifungal therapy. Pharmacokinetic properties of isavuconazole, including a peak serum concentration exceeding 1.85 µg/mL in healthy volunteers, support its potential utility as a treatment option against these uncommon yeasts whose MICs remain below this threshold. Of note, Candida appears primarily isolated from blood cultures irrespective of antifungal therapy. [3]

A 2024 in vitro study investigated the inhibitory capacity of 28 antibiotics belonging to multiple pharmacologic classes, including aminoglycosides, beta-lactams, macrolides, quinolones, tetracyclines, and sulfonamides, against Kluyveromyces marxianus using a turbidimetric microplate bioassay. Kluyveromyces marxianus ATCC 8554 was cultured in a semi-synthetic whey matrix fortified to a final composition of 0.9% protein and 5.0% lactose at pH 7.0. The assay employed 16 replicates across 12 antibiotic concentrations per compound, spanning aqueous solutions prepared at 1000 mg/L. Results demonstrated that cephalosporins, quinolones, and tetracyclines significantly inhibited K. marxianus growth at concentrations nearing their Maximum Residue Limits (MRLs) as defined for milk. Notably, IC50 values for agents such as cephalexin (100 mcg/L), ciprofloxacin (178 mcg/L), and oxytetracycline (62 mcg/L) approximated or matched established MRL thresholds (e.g., 100 mcg/L for tetracyclines and 100 mcg/L for some fluoroquinolones). In contrast, beta-lactams such as ampicillin and aminoglycosides, including neomycin, exhibited IC50 levels substantially exceeding MRLs, suggesting minimal inhibitory activity at physiologically relevant concentrations. The authors attributed the observed resistance to certain beta-lactams to potential penicillinase activity in K. marxianus. These findings underscore the need for pre-treatment of dairy whey containing antimicrobial residues prior to its industrial application in fermentation processes, particularly when employing K. marxianus for bioethanol or probiotic production. [4]

A 2021 cross-sectional laboratory investigation evaluated the in vitro antifungal susceptibility profiles of Kluyveromyces marxianus and Clavispora lusitaniae strains isolated from diverse clinical specimens. The analysis included 21 K. marxianus and eight C. lusitaniae isolates obtained from bronchoalveolar lavage fluid, urine, peritoneal fluid, and blood cultures of hospitalized patients with suspected invasive fungal infections. K. marxianus demonstrated the highest geometric mean MIC to amphotericin B (1.0 mcg/mL after 24 hours) and the lowest to voriconazole (0.010 mcg/mL). Voriconazole exhibited potent activity against both species, with C. lusitaniae strains showing a geometric mean MIC of 0.011 mcg/mL. Fluconazole, itraconazole, and posaconazole also displayed favorable activity against K. marxianus, with MIC90 values remaining at or below 0.06 mcg/mL. In contrast, C. lusitaniae isolates exhibited significantly reduced susceptibility to flucytosine, with MICs reaching as high as 64 mcg/mL and a geometric mean MIC of 8 mcg/mL, indicating considerable variability in susceptibility, potentially limiting its therapeutic utility. Echinocandins demonstrated consistent activity against both organisms: micafungin, anidulafungin, and caspofungin showed MIC90 values ≤0.5 μg/mL for both species. These data suggest that while azoles and echinocandins maintain robust in vitro activity against both non-albicans Candida species, amphotericin B and flucytosine demonstrated reduced potency for K. marxianus and C. lusitaniae, respectively. The results underscore the clinical importance of susceptibility testing when managing infections caused by emerging fungal pathogens. [5]

References:

[1] Dufresne SF, Marr KA, Sydnor E, et al. Epidemiology of Candida kefyr in patients with hematologic malignancies. J Clin Microbiol. 2014;52(6):1830-1837. doi:10.1128/JCM.00131-14
[2] Ahmad S, Khan Z, Al-Sweih N, Alfouzan W, Joseph L, Asadzadeh M. Candida kefyr in Kuwait: Prevalence, antifungal drug susceptibility and genotypic heterogeneity. PLoS One. 2020;15(10):e0240426. Published 2020 Oct 27. doi:10.1371/journal.pone.0240426
[3] Taj-Aldeen SJ, AbdulWahab A, Kolecka A, Deshmukh A, Meis JF, Boekhout T. Uncommon opportunistic yeast bloodstream infections from Qatar. Med Mycol. 2014;52(5):552-556. doi:10.1093/mmycol/myu016
[4] Lisandro Althaus R, Guillermo Nagel O, Eluk D. Inhibitory action of antibiotics on Kluyveromyces marxianus. Rev Argent Microbiol. 2024;56(2):134-139. doi:10.1016/j.ram.2023.12.004
[5] Atalay A, Koç AN, Çakir N, Mutlu Sariguzel F, Sağiroğlu P. The investigation of antifungal susceptibilities of Kluyveromyces marxianus and Clavispora lusitaniae strains isolated from various clinical specimens. Journal of Surgery and Medicine. 2021;5(11):1104-1106. doi:10.28982/josam.892965

Literature Review

A search of the published medical literature revealed 3 studies investigating the researchable question:

What antimicrobial therapy is recommended or studied for the treatment of Kluyveromyces marxianus (Candida kefyr)?

Level of evidence

D - Case reports or unreliable data  Read more→



Please see Tables 1-3 for your response.


 

Bloodstream infection with Candida kefyr/Kluyveromyces marxianus: case report and draft genome

Design

Case report

Case presentation

A 61-year-old male was diagnosed with acute myeloid leukaemia in 2018 and received standard induction chemotherapy with cytarabine and idarubicin, followed by an allogeneic haematopoietic stem cell transplantation in 2019 at the University Hospital in Basel, Switzerland. He received routine antimicrobial prophylaxis with trimethoprim/sulfamethoxazole 160/800 mg three times weekly for Pneumocystis jirovecii and toxoplasmosis, and fluconazole 400 mg once weekly for yeast infections.

Two weeks after starting induction chemotherapy and prophylaxis, a peripherally drawn aerobic blood culture became positive after the patient developed fever and diarrhoea. The isolate, labeled 100656-19, was identified as Candida kefyr/ Kluyveromyces marxianus using MALDI-TOF mass spectrometry. Minimal inhibitory concentrations in mg/L were as follows: amphotericin B 1.0, anidulafungin 0.03, micafungin 0.03, caspofungin ≤0.008, 5-fluorocytosine 0.5, posaconazole 0.06, voriconazole ≤0.008, itraconazole 0.12, and fluconazole ≤0.12. Follow-up blood cultures remained negative, and the peripherally inserted central catheter, which was removed, showed no fungal growth.

Antifungal therapy was changed to fluconazole 400 mg daily. Nineteen days later, antifungal treatment was prematurely stopped, and four weeks afterward, the patient developed hepatic and pulmonary lesions on imaging, likely due to disseminated Candida infection. Fluconazole 400 mg daily was reintroduced, and the lesions fully resolved after 3 months, at which point antifungal prophylaxis was switched to posaconazole 300 mg daily. Echocardiography and ophthalmological exams revealed no signs of endocarditis or chorioretinitis, and no oral candidiasis was observed. The patient regularly consumed yogurt and recalled some brands contained C. kefyr. Notably, genome sequencing revealed that the isolate was clustered with strains associated with dairy products in Europe.

Study Author Conclusions

Candida kefyr is an emerging pathogen, particularly in immunocompromised and haematological patients. The sexual form of this fungus is known as Kluyveromyces marxianus, and is of biotechnological interest due to its heat tolerance, ability to produce bioethanol and for enzyme production. This case reported the first clinical isolate draft genome sequence of this species from a bloodstream infection of an immunocompromised patient and its potential treatments.

References:

Seth-Smith HMB, Büchler AC, Hinic V, Medinger M, Widmer AF, Egli A. Bloodstream infection with Candida kefyr/Kluyveromyces marxianus: case report and draft genome. Clin Microbiol Infect. 2020;26(4):522-524. doi:10.1016/j.cmi.2019.11.014

 

First case of Kluyveromyces marxianus (Candida kefyr) late onset keratitis after lamellar endothelial corneal graft

Design

Case report

Case presentation

A 69-year-old male with a history of Fuchs endothelial dystrophy underwent a successful Descemet Membrane Endothelial Keratoplasty (DMEK) on the right eye, enhancing visual acuity significantly in the first three weeks post-surgery. Previously, he had cataract surgery and trabeculectomy for pseudoexfoliation (PEX) glaucoma, a condition where fibrillary material affects the lens and increases intraocular pressure. Post-DMEK, dexamethasone eye drops were administered to prevent graft rejection.

Three months later, due to PEX-related lens luxation, the patient needed an exchange to an iris-fixated intraocular lens. Although initial recovery was positive, nine months post-DMEK, he developed sudden eye pain, redness, and corneal edema, initially treated as graft rejection with steroid eye drops. However, upon further evaluation, a dense corneal infiltrate was found, attributed to Kluyveromyces marxianus (syn. Candida kefyr), identified via MALDI-TOF mass spectrometry and rDNA sequencing.

Despite aggressive treatment with antibiotics and various antifungal regimens, including fluconazole and voriconazole, and later amphotericin B, the keratitis did not resolve, necessitating emergency full-thickness keratoplasty. This revealed a confirmed Candida infection through histopathology. Post-surgery, the new graft showed no fungal recurrence, with prophylactic antifungal therapy including topical voriconazole and amphotericin B injections. The patient remained stable without signs of fungal infection up to the end of the follow-up period.

Study Author Conclusions

Yeast infections are an uncommon complication following DMEK, presenting in 0.15% of cases. While direct biopsy often identifies pathogens, Candida-positive cultures from the corneal donor rim might predict fungal keratitis before symptoms arise. However, in the described patient, no infection signs were present four weeks post-surgery, and the donor rim was uncontaminated. Longer donor cornea preservation times do not necessarily increase contamination risk, and only a small portion of positive rim cultures lead to post-keratoplasty infections.

Kluyveromyces marxianus, although rare, poses a serious bloodstream infection threat with a higher mortality rate in ICU patients compared to Candida albicans, especially in those with hematologic malignancies. Its infections peak in summer, possibly due to dairy product refrigeration issues.

This case highlighted keratitis symptoms appearing nine months post-DMEK, with late infection onset potentially due to yeast localization between graft and host cornea, making treatment challenging. Therapeutic strategies combine systemic with intracameral and intrastromal antifungal injections, particularly against deep stromal Candida infections, to avoid full-thickness keratoplasty.

The antifungal regimen included oral fluconazole and voriconazole injections, though repeated administration was necessary to maintain therapeutic levels. Despite in vitro susceptibility data, the lack of in vivo breakpoints impacts treatment decisions, complicating the need for graft removal. Interdisciplinary studies are needed to better understand Kluyveromyces marxianus and develop effective treatments.

References:

Aldejohann AM, Theuersbacher J, Haug L, et al. First case of Kluyveromyces marxianus (Candida kefyr) late onset keratitis after lamellar endothelial corneal graft. Med Mycol Case Rep. 2021;32:21-24. Published 2021 Feb 12. doi:10.1016/j.mmcr.2021.02.001

Systemic candidiasis by Candida kefyr: Case series from Pakistan

Design

Case series

Case presentation

A 2023 case series detailed two clinical cases of systemic candidiasis caused by Candida kefyr (C. kefyr) identified at Fauji Foundation Hospital in Rawalpindi, Pakistan. Both cases involved elderly female patients with significant underlying comorbidities: one with chronic obstructive pulmonary disease (COPD) and a prior history of pulmonary tuberculosis, and the other with congestive cardiac failure, diabetes mellitus, and a background of recurrent urinary tract infections. In each instance, C. kefyr was isolated as a pure culture from either sputum or urine specimens in first and second case, respectively. The isolates produced lactose-fermenting colonies and were initially identified using standard phenotypic methods, including MacConkey agar and Gram stain. Final species-level confirmation was performed using matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry at the National Reference Laboratory of the National Institutes of Health, Islamabad. Antifungal susceptibility was evaluated using the Vitek 2 system, showing sensitivity to amphotericin B, voriconazole, and flucytosine in both isolates. Therapeutic interventions varied in clinical outcome. The first patient received itraconazole (dose unspecified) along with supportive corticosteroid therapy and chest physiotherapy, resulting in clinical improvement and hospital discharge. Conversely, the second patient, who received intravenous voriconazole (dose unspecified), succumbed to underlying disease complications and extensive comorbidity despite appropriate antifungal therapy. The case series underscores the emergent clinical relevance of non-albicans Candida species, particularly C. kefyr, in nosocomial infections among immunocompromised hosts. Notably, both isolates demonstrated susceptibility to key antifungal agents commonly used for invasive candidiasis, although prior surveillance data suggest emerging resistance in other geographic contexts. The authors emphasize that isolates of C. kefyr recovered from clinical specimens should no longer be dismissed as contaminants, particularly in high-risk hospitalized individuals, highlighting the necessity for early diagnostic vigilance and targeted antifungal management to optimize clinical outcomes.

Study Author Conclusions

Among non-albicans Candida spp., C. kefyr has emerged as a significant pathogen in nosocomial infections. This study reports the emergence of C. kefyr strains from Pakistan for the first time. It is highly recommended that its isolation from the clinical specimens should no longer be ignored or considered a contaminant. An early diagnosis and prompt treatment may improve the morbidity and mortality rates.

References:

Syed S, Amir A, Abbas MW, Ishtiaq S, Ali H, Abbasi SA. Systemic candidiasis by Candida kefyr: Case series from Pakistan. J Med Case Rep Case Series. 2023;4(6). doi:10.38207/JMCRCS/2023/APR04060437.​